Biblio

Author Title Type [ Year(Desc)]
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2016
Angermueller C, Clark SJ, Lee HJ, Macaulay IC, Teng MJ, Hu TXiaoming, Krueger F, Smallwood SA, Ponting CP, Voet T, et al. Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity. Nat Methods. 2016.
2018
Rulands S, Lee HJ, Clark SJ, Angermueller C, Smallwood SA, Krueger F, Mohammed H, Dean W, Nichols J, Rugg-Gunn P, et al. Genome-Scale Oscillations in DNA Methylation during Exit from Pluripotency. Cell Syst. 2018.
2020
McCarthy DJ, Rostom R, Huang Y, Kunz DJ, Danecek P, Bonder MJan, Hagai T, Lyu R, Wang W, Gaffney DJ, et al. Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes. Nat Methods. 2020.
Rajewsky N, Almouzni G, Gorski SA, Aerts S, Amit I, Bertero MG, Bock C, Bredenoord AL, Cavalli G, Chiocca S, et al. LifeTime and improving European healthcare through cell-based interceptive medicine. Nature. 2020.
Cuomo ASE, Seaton DD, McCarthy DJ, Martinez I, Bonder MJan, Garcia-Bernardo J, Amatya S, Madrigal P, Isaacson A, Buettner F, et al. Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression. Nat Commun. 2020;11(1):1572.
Alda-Catalinas C, Bredikhin D, Hernando-Herraez I, Santos F, Kubinyecz O, Eckersley-Maslin MA, Stegle O, Reik W. A Single-Cell Transcriptomics CRISPR-Activation Screen Identifies Epigenetic Regulators of the Zygotic Genome Activation Program. Cell Syst. 2020.
2021
Brenes AJ, Yoshikawa H, Bensaddek D, Mirauta B, Seaton D, Hukelmann JL, Jiang H, Stegle O, Lamond AI. Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome. Cell Rep. 2021;35(4):109032.
2023
Funk MC, Gleixner JG, Heigwer F, Vonficht D, Valentini E, Aydin Z, Tonin E, Del Prete S, Mahara S, Throm Y, et al. Aged intestinal stem cells propagate cell-intrinsic sources of inflammaging in mice. Dev Cell. 2023;58(24):2914-2929.e7.
Ban M, Bredikhin D, Huang Y, Bonder MJan, Katarzyna K, Oliver AJ, Wilson NK, Coupland P, Hadfield J, Göttgens B, et al. Expression profiling of cerebrospinal fluid identifies dysregulated antiviral mechanisms in multiple sclerosis. Brain. 2023.
Kumasaka N, Rostom R, Huang N, Polanski K, Meyer KB, Patel S, Boyd R, Gomez C, Barnett SN, Panousis NI, et al. Mapping interindividual dynamics of innate immune response at single-cell resolution. Nat Genet. 2023;55(6):1066-1075.
Arutyunyan A, Roberts K, Troulé K, Wong FCK, Sheridan MA, Kats I, Garcia-Alonso L, Velten B, Hoo R, Ruiz-Morales ER, et al. Spatial multiomics map of trophoblast development in early pregnancy. Nature. 2023.