Biblio

Author Title [ Type(Desc)] Year
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Journal Article
Bruggner RV, Bodenmiller B, Dill DL, Tibshirani RJ, Nolan GP. Automated identification of stratifying signatures in cellular subpopulations. Proc Natl Acad Sci U S A. 2014.
Lee A, Floyd K, Wu S, Fang Z, Tan TKai, Froggatt HM, Powers JM, Leist SR, Gully KL, Hubbard ML, et al. BCG vaccination stimulates integrated organ immunity by feedback of the adaptive immune response to imprint prolonged innate antiviral resistance. Nat Immunol. 2023.
Aghaeepour N, Chattopadhyay P, Chikina M, Dhaene T, Van Gassen S, Kursa M, Lambrecht BN, Malek M, Qian Y, Qiu P, et al. A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes. Cytometry A. 2015.
Sarno J, Domizi P, Liu Y, Merchant M, Pedersen CBligaard, Jedoui D, Jager A, Nolan GP, Gaipa G, Bendall SC, et al. Dasatinib overcomes glucocorticoid resistance in B-cell acute lymphoblastic leukemia. Nat Commun. 2023;14(1):2935.
Lujan E, Zunder ER, Ng YHan, Goronzy IN, Nolan GP, Wernig M. Early reprogramming regulators identified by prospective isolation and mass cytometry. Nature. 2015.
Frei AP, Bava F-A, Zunder ER, W Y Hsieh E, Chen S-Y, Nolan GP, Gherardini PFederico. Highly multiplexed simultaneous detection of RNAs and proteins in single cells. Nat Methods. 2016.
Spitzer MH, Gherardini PFederico, Fragiadakis GK, Bhattacharya N, Yuan RT, Hotson AN, Finck R, Carmi Y, Zunder ER, Fantl WJ, et al. IMMUNOLOGY. An interactive reference framework for modeling a dynamic immune system. Science. 2015;349(6244):1259425.
Pyne S, Lee SX, Wang K, Irish J, Tamayo P, Nazaire M-D, Duong T, Ng S-K, Hafler D, Levy R, et al. Joint Modeling and Registration of Cell Populations in Cohorts of High-Dimensional Flow Cytometric Data. PLoS One. 2014;9(7):e100334.
Spitzer MH, Nolan GP. Mass Cytometry: Single Cells, Many Features. Cell. 2016;165(4):780-791.
Ji AL, Rubin AJ, Thrane K, Jiang S, Reynolds DL, Meyers RM, Guo MG, George BM, Mollbrink A, Bergenstråhle J, et al. Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma. Cell. 2020.
Sachs Z, LaRue RS, Nguyen HT, Sachs K, Noble KE, Hassan NAzyan Mohd, Diaz-Flores E, Rathe SK, Sarver AL, Bendall SC, et al. NRASG12V oncogene facilitates self-renewal in a murine model of acute myelogenous leukemia. Blood. 2014.
Zunder ER, Finck R, Behbehani GK, Amir E-AD, Krishnaswamy S, Gonzalez VD, Lorang CG, Bjornson Z, Spitzer MH, Bodenmiller B, et al. Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm. Nat Protoc. 2015;10(2):316-333.
Singh A, Spitzer MH, Joy JP, Kaileh M, Qiu X, Nolan GP, Sen R. Postmitotic G1 phase survivin drives mitogen-independent cell division of B lymphocytes. Proc Natl Acad Sci U S A. 2022;119(18):e2115567119.
Behbehani GK, Finck R, Samusik N, Sridhar K, Fantl WJ, Greenberg PL, Nolan GP. Profiling myelodysplastic syndromes by mass cytometry demonstrates abnormal progenitor cell phenotype and differentiation. Cytometry B Clin Cytom. 2020.
Bongen E, Lucian H, Khatri A, Fragiadakis GK, Bjornson ZB, Nolan GP, Utz PJ, Khatri P. Sex Differences in the Blood Transcriptome Identify Robust Changes in Immune Cell Proportions with Aging and Influenza Infection. Cell Rep. 2019;29(7):1961-1973.e4.
Bjornson ZB, Nolan GP, Fantl WJ. Single-cell mass cytometry for analysis of immune system functional states. Curr Opin Immunol. 2013.
Mingueneau M, Krishnaswamy S, Spitzer MH, Bendall SC, Stone EL, Hedrick SM, Pe'er D, Mathis D, Nolan GP, Benoist C. Single-cell mass cytometry of TCR signaling: Amplification of small initial differences results in low ERK activation in NOD mice. Proc Natl Acad Sci U S A. 2014.
Hickey JW, Haist M, Horowitz N, Caraccio C, Tan Y, Rech AJ, Baertsch M-A, Rovira-Clavé X, Zhu B, Vazquez G, et al. T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response. Cell Rep. 2023;42(12):113494.
McIlwain DR, Grusdat M, Pozdeev VI, Xu HC, Shinde P, Reardon C, Hao Z, Beyer M, Bergthaler A, Häussinger D, et al. T-cell STAT3 is required for the maintenance of humoral immunity to LCMV. Eur J Immunol. 2014.