Biblio

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Journal Article

Luca BA, Steen CB, Matusiak M, Azizi A, Varma S, Zhu C, Przybyl J, Espín-Pérez A, Diehn M, Alizadeh AA, et al. Atlas of clinically distinct cell states and ecosystems across human solid tumors. Cell. 2021.

Gonzalez VD, Huang Y-W, Delgado-Gonzalez A, Chen S-Y, Donoso K, Sachs K, Gentles AJ, Allard GM, Kolahi KS, Howitt BE, et al. High-grade serous ovarian tumor cells modulate NK cell function to create an immune-tolerant microenvironment. Cell Rep. 2021;36(9):109632.

Vahid MR, Brown EL, Steen CB, Zhang W, Jeon HSoo, Kang M, Gentles AJ, Newman AM. High-resolution alignment of single-cell and spatial transcriptomes with CytoSPACE. Nat Biotechnol. 2023.

Thorsson V, Gibbs DL, Brown SD, Wolf D, Bortone DS, Yang T-HOu, Porta-Pardo E, Gao GF, Plaisier CL, Eddy JA, et al. The Immune Landscape of Cancer. Immunity. 2019;51(2):411-412.

Steen CB, Luca BA, Esfahani MS, Azizi A, Sworder BJ, Nabet BY, Kurtz DM, Liu CLong, Khameneh F, Advani RH, et al. The landscape of tumor cell states and ecosystems in diffuse large B cell lymphoma. Cancer Cell. 2021.

Brennan K, Espín-Pérez A, Chang S, Bedi N, Saumyaa S, Shin JHo, Plevritis SK, Gevaert O, Sunwoo JB, Gentles AJ. Loss of p53-DREAM-mediated repression of cell cycle genes as a driver of lymph node metastasis in head and neck cancer. Genome Med. 2023;15(1):98.

Gentles AJ, Newman AM, Liu CLong, Bratman SV, Feng W, Kim D, Nair VS, Xu Y, Khuong A, Hoang CD, et al. The prognostic landscape of genes and infiltrating immune cells across human cancers. Nat Med. 2015.

McClellan JScott, Dove C, Gentles AJ, Ryan CE, Majeti R. Reprogramming of primary human Philadelphia chromosome-positive B cell acute lymphoblastic leukemia cells into nonleukemic macrophages. Proc Natl Acad Sci U S A. 2015.

Newman AM, Liu CLong, Green MR, Gentles AJ, Feng W, Xu Y, Hoang CD, Diehn M, Alizadeh AA. Robust enumeration of cell subsets from tissue expression profiles. Nat Methods. 2015.