Biblio

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Journal Article

Segura MLRuiz Tej, Moussa EAbou, Garabello E, Nakahara TS, Makhlouf M, Mathew LS, Wang L, Valle F, S Y Huang S, Mainland JD, et al. A 3D transcriptomics atlas of the mouse nose sheds light on the anatomical logic of smell. Cell Rep. 2022;38(12):110547.

Angerer P, Fischer DS, Theis FJ, Scialdone A, Marr C. Automatic identification of relevant genes from low-dimensional embeddings of single cell RNAseq data. Bioinformatics. 2020.

Lubatti G, Stock M, Iturbide A, Segura MLRuiz Tej, Riepl M, Tyser RCV, Danese A, Colomé-Tatché M, Theis FJ, Srinivas S, et al. CIARA: a cluster-independent algorithm for identifying markers of rare cell types from single-cell sequencing data. Development. 2023;150(11).

Lubatti G, Stock M, Iturbide A, Segura MLRuiz Tej, Riepl M, Tyser RCV, Danese A, Colomé-Tatché M, Theis FJ, Srinivas S, et al. CIARA: a cluster-independent algorithm for identifying markers of rare cell types from single-cell sequencing data. Development. 2023.

S Y Huang S, Makhlouf M, AbouMoussa EH, Segura MLRuiz Tej, Mathew LS, Wang K, Leung MC, Chaussabel D, Logan DW, Scialdone A, et al. Differential regulation of the immune system in a brain-liver-fatsorgan network during short term fasting. Mol Metab. 2020:101038.

Scialdone A, Rivron N. In preprints: improving and interrogating embryo models. Development. 2022;149(23).

Beagrie RA, Thieme CJ, Annunziatella C, Baugher C, Zhang Y, Schueler M, Kukalev A, Kempfer R, Chiariello AM, Bianco S, et al. Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C. Nat Methods. 2023.

Weiβ M, Chanou A, Schauer T, Tvardovskiy A, Meiser S, König A-C, Schmidt T, Kruse E, Ummethum H, Trauner M, et al. Single-copy locus proteomics of early- and late-firing DNA replication origins identifies a role of Ask1/DASH complex in replication timing control. Cell Rep. 2023;42(2):112045.