Biblio

Author Title Type [ Year(Asc)]
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2024
Janiszewska M, Tabassum DP, Castaño Z, Cristea S, Yamamoto KN, Kingston NL, Murphy KC, Shu S, Harper NW, Del Alcazar CGil, et al. Author Correction: Subclonal cooperation drives metastasis by modulating local and systemic immune microenvironments. Nat Cell Biol. 2024.
2023
Hoetker MS, Yagi M, Di Stefano B, Langerman J, Cristea S, Wong LPing, Huebner AJ, Charlton J, Deng W, Haggerty C, et al. H3K36 methylation maintains cell identity by regulating opposing lineage programmes. Nat Cell Biol. 2023.
Jovanović B, Temko D, Stevens LE, Seehawer M, Fassl A, Murphy K, Anand J, Garza K, Gulvady A, Qiu X, et al. Heterogeneity and transcriptional drivers of triple-negative breast cancer. Cell Rep. 2023;42(12):113564.
Penter L, Liu Y, Wolff JO, Yang L, Taing L, Jhaveri A, Southard J, Patel M, Cullen N, Pfaff KLindahl, et al. Mechanisms of response and resistance to combined decitabine and ipilimumab for advanced myeloid disease. Blood. 2023.
Nishida J, Cristea S, Bodapati S, Puleo J, Bai G, Patel A, Hughes M, Snow C, Borges V, Ruddy KJ, et al. Peripheral blood TCR clonotype diversity as an age-associated marker of breast cancer progression. Proc Natl Acad Sci U S A. 2023;120(49):e2316763120.
Liu Y, Altreuter J, Bodapati S, Cristea S, Wong CJ, Wu CJ, Michor F. Predicting patient outcomes after treatment with immune checkpoint blockade: A review of biomarkers derived from diverse data modalities. Cell Genom. 2023:100444.
Landshammer A, Bolondi A, Kretzmer H, Much C, Buschow R, Rose A, Wu H-J, Mackowiak SD, Braendl B, Giesselmann P, et al. is a transiently expressed non-coding RNA essential for human endoderm formation. Elife. 2023;12.
Yang L, Wang J, Altreuter J, Jhaveri A, Wong CJ, Song L, Fu J, Taing L, Bodapati S, Sahu A, et al. Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA. Nat Protoc. 2023.
2022
Dean J, Goldberg E, Michor F. Designing optimal allocations for cancer screening using queuing network models. PLoS Comput Biol. 2022;18(5):e1010179.
Mercier FEmile, Shi J, Sykes DBrian, Oki T, Jankovic M, Man CHim, Kfoury YSami, Miller E, He S, Zhu A, et al. In vivo genome-wide CRISPR screening in murine acute myeloid leukemia uncovers microenvironmental dependencies. Blood Adv. 2022.
Dean JA, Tanguturi SK, Cagney D, Shin K-Y, Youssef G, Aizer A, Rahman R, Hammoudeh L, Reardon D, Lee E, et al. Phase I study of a novel glioblastoma radiation therapy schedule exploiting cell-state plasticity. Neuro Oncol. 2022.
2021
Nicholson MD, Endler L, Popa A, Genger J-W, Bock C, Michor F, Bergthaler A. Response to comment on "Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2". Sci Transl Med. 2021;13(617):eabj3222.
2020
Murata K, Jadhav U, Madha S, van Es J, Dean J, Cavazza A, Wucherpfennig K, Michor F, Clevers H, Shivdasani RA. Ascl2-Dependent Cell Dedifferentiation Drives Regeneration of Ablated Intestinal Stem Cells. Cell Stem Cell. 2020.
Roney JP, Ferlic J, Michor F, McDonald TO. ESTIpop: A computational tool to simulate and estimate parameters for continuous-time Markov branching processes. Bioinformatics. 2020.
Shu S, Wu H-J, Ge JY, Zeid R, Harris IS, Jovanović B, Murphy K, Wang B, Qiu X, Endress JE, et al. Synthetic Lethal and Resistance Interactions with BET Bromodomain Inhibitors in Triple-Negative Breast Cancer. Mol Cell. 2020.
2019
Yamamoto KN, Nakamura A, Liu LL, Stein S, Tramontano AC, Kartoun U, Shimizu T, Inoue Y, Asakuma M, Haeno H, et al. Computational modeling of pancreatic cancer patients receiving FOLFIRINOX and gemcitabine-based therapies identifies optimum intervention strategies. PLoS One. 2019;14(4):e0215409.
2013
Choudhury S, Almendro V, Merino VF, Wu Z, Maruyama R, Su Y, Martins FC, Fackler MJo, Bessarabova M, Kowalczyk A, et al. Molecular Profiling of Human Mammary Gland Links Breast Cancer Risk to a p27(+) Cell Population with Progenitor Characteristics. Cell Stem Cell. 2013.
Zhao R, Michor F. Patterns of proliferative activity in the colonic crypt determine crypt stability and rates of somatic evolution. PLoS Comput Biol. 2013;9(6):e1003082.