Biblio

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Journal Article

Okumura N, Akutsu H, Sugawara T, Miura T, Takezawa Y, Hosoda A, Yoshida K, Ichida JK, Yamada M, Hamatani T, et al. β-Catenin Functions Pleiotropically in Differentiation and Tumorigenesis in Mouse Embryo-Derived Stem Cells. PLoS One. 2013;8(5):e63265.

Isono W, Kawasaki T, Ichida JK, Nagasaka K, Hiraike O, Umezawa A, Akutsu H. Transcriptomic analysis of feeder-free culture system for maintaining naïve-state pluripotency in human pluripotent stem cells. Stem Cell Investig. 2023;10:10.

Bonham LW, Geier EG, Sirkis DW, Leong JK, Ramos EMarisa, Wang Q, Karydas A, Lee SE, Sturm VE, Sawyer RP, et al. Radiogenomics of expansion carriers reveals global transposable element de-repression and enables prediction of thalamic atrophy and clinical impairment. J Neurosci. 2022.

Hung S-T, Linares GR, Chang W-H, Eoh Y, Krishnan G, Mendonca S, Hong S, Shi Y, Santana M, Kueth C, et al. PIKFYVE inhibition mitigates disease in models of diverse forms of ALS. Cell. 2023.

Gopalakrishnan S, Hor P, Ichida JK. New approaches for direct conversion of patient fibroblasts into neural cells. Brain Res. 2015.

Carter AC, Davis-Dusenbery BN, Koszka K, Ichida JK, Eggan K. Nanog-Independent Reprogramming to iPSCs with Canonical Factors. Stem Cell Reports. 2014;2(2):119-26.

Wainger BJ, Buttermore ED, Oliveira JT, Mellin C, Lee S, Saber WAfshar, Wang AJ, Ichida JK, Chiu IM, Barrett L, et al. Modeling pain in vitro using nociceptor neurons reprogrammed from fibroblasts. Nat Neurosci. 2014.

Shi Y, Hung S-T, Rocha G, Lin S, Linares G, Staats KA, Seah C, Wang Y, Chickering M, Lai J, et al. Identification and therapeutic rescue of autophagosome and glutamate receptor defects in C9ORF72 and sporadic ALS neurons. JCI Insight. 2019;5.

Bowles KR, M Silva C, Whitney K, Bertucci T, Berlind JE, Lai JD, Garza JC, Boles NC, Mahali S, Strang KH, et al. ELAVL4, splicing, and glutamatergic dysfunction precede neuron loss in MAPT mutation cerebral organoids. Cell. 2021.

Hor P, Punj V, Calvert BA, Castaldi A, Miller AJ, Carraro G, Stripp BR, Brody SL, Spence JR, Ichida JK, et al. Efficient Generation and Transcriptomic Profiling of Human iPSC-Derived Pulmonary Neuroendocrine Cells. iScience. 2020;23(5):101083.

Lee S, Jun Y-W, Linares GR, Butler B, Yuva-Adyemir Y, Moore J, Krishnan G, Ruiz-Juarez B, Santana M, Pons M, et al. Downregulation of Hsp90 and the antimicrobial peptide Mtk suppresses poly(GR)-induced neurotoxicity in C9ORF72-ALS/FTD. Neuron. 2023.

Li Y, Ichida JK. Directly Reprogrammed Neurons Still Have Some Growing Up to Do. Cell Stem Cell. 2019;25(1):1-2.

Zhang S, Moll T, Rubin-Sigler J, Tu S, Li S, Yuan E, Liu M, Butt A, Harvey C, Gornall S, et al. Deep learning modeling of rare noncoding genetic variants in human motor neurons defines as a therapeutic target for ALS. medRxiv. 2024.

Ortega JA, Sasselli IR, Boccitto M, Fleming AC, Fortuna TR, Li Y, Sato K, Clemons TD, McKenna ED, Nguyen TP, et al. CLIP-Seq analysis enables the design of protective ribosomal RNA bait oligonucleotides against ALS/FTD poly-GR pathophysiology. Sci Adv. 2023;9(45):eadf7997.

Zhao Z, Sagare AP, Ma Q, Halliday MR, Kong P, Kisler K, Winkler EA, Ramanathan A, Kanekiyo T, Bu G, et al. Central role for PICALM in amyloid-β blood-brain barrier transcytosis and clearance. Nat Neurosci. 2015.

Hendricks E, Quihuis AM, Hung S-T, Chang J, Dorjsuren N, Der B, Staats KA, Shi Y, Maria NSSta, Jacobs RE, et al. The C9ORF72 repeat expansion alters neurodevelopment. Cell Rep. 2023;42(8):112983.

Lai JD, Ichida JK. C9ORF72 protein function and immune dysregulation in amyotrophic lateral sclerosis. Neurosci Lett. 2019:134523.

Tsioras K, Smith KC, Edassery SL, Garjani M, Li Y, Williams C, McKenna ED, Guo W, Wilen AP, Hark TJ, et al. Analysis of proteome-wide degradation dynamics in ALS SOD1 iPSC-derived patient neurons reveals disrupted VCP homeostasis. Cell Rep. 2023:113160.