Biblio

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Journal Article

Ardalani H, Sengupta S, Harms V, Vickerman V, Thomson JA, Murphy WL. 3-D Culture and Endothelial Cells Improve Maturity of Human Pluripotent Stem Cell-Derived Hepatocytes. Acta Biomater. 2019.

D'Souza SSandra, Kumar A, Maufort J, Weinfurter JT, Raymond M, Strelchenko N, Perrin E, Coonen J, Mejia A, Simmons H, et al. Assessment of Safety and Immunogenicity of MHC homozygous iPSC-derived CD34+ Hematopoietic Progenitors in a NHP Model. Blood Adv. 2022.

Barry C, Schmitz MT, Argus C, Bolin JM, Probasco MD, Leng N, Duffin BM, Steill J, Swanson S, McIntosh BE, et al. Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. PLoS Comput Biol. 2019;15(12):e1007543.

Lister R, Pelizzola M, Kida YS, R Hawkins D, Nery JR, Hon G, Antosiewicz-Bourget J, O'Malley R, Castanon R, Klugman S, et al. Corrigendum: Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature. 2014;514(7520):126.

Hou Z, Jiang P, Swanson SA, Elwell AL, Nguyen BKim S, Bolin JM, Stewart R, Thomson JA. A cost-effective RNA sequencing protocol for large-scale gene expression studies. Sci Rep. 2015;5:9570.

Hou Z, Zhang Y, Propson NE, Howden SE, Chu L-F, Sontheimer EJ, Thomson JA. Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis. Proc Natl Acad Sci U S A. 2013.

Friend K, Brooks HA, Propson NE, Thomson JA, Kimble J. Embryonic Stem Cell Growth Factors Regulate eIF2α Phosphorylation. PLoS One. 2015;10(9):e0139076.

D'Souza SS, Kumar A, Weinfurter J, Park MAe, Maufort J, Tao L, Kang HJ, Dettle ST, Golos T, Thomson JA, et al. Generation of SIV-resistant T cells and macrophages from nonhuman primate induced pluripotent stem cells with edited CCR5 locus. Stem Cell Reports. 2022.

Chu L-F, Mamott D, Ni Z, Bacher R, Liu C, Swanson S, Kendziorski C, Stewart R, Thomson JA. An In Vitro Human Segmentation Clock Model Derived from Embryonic Stem Cells. Cell Rep. 2019;28(9):2247-2255.e5.

Roy S, Lagree S, Hou Z, Thomson JA, Stewart R, Gasch AP. Integrated module and gene-specific regulatory inference implicates upstream signaling networks. PLoS Comput Biol. 2013;9(10):e1003252.

Brown J, Barry C, Schmitz MT, Argus C, Bolin JM, Schwartz MP, Van Aartsen A, Steill J, Swanson S, Stewart R, et al. Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells. PLoS Comput Biol. 2021;17(3):e1008778.

Jiang P, Hou Z, Propson NE, H Soh T, Thomson JA, Stewart R. MPBind: A Meta-Motif Based Statistical Framework and Pipeline to Predict Binding Potential of SELEX-derived Aptamers. Bioinformatics. 2014.

Brumbaugh J, Russell JD, Yu P, Westphall MS, Coon JJ, Thomson JA. NANOG Is Multiply Phosphorylated and Directly Modified by ERK2 and CDK1 In Vitro. Stem Cell Reports. 2014;2(1):18-25.

Magli A, Schnettler E, Swanson SA, Borges L, Hoffman K, Stewart R, Thomson JA, Keirstead SA, Perlingeiro RCR. Pax3 and Tbx5 specify whether PDGFRα+ cells assume skeletal or cardiac muscle fate in differentiating ES cells. Stem Cells. 2014.

Capowski EE, Wright LS, Liang K, M Phillips J, Wallace K, Petelinsek A, Hagstrom A, Pinilla I, Borys K, Lien J, et al. Regulation of WNT Signaling by VSX2 during Optic Vesicle Patterning in Human Induced Pluripotent Stem Cells. Stem Cells. 2016.

Jung HSun, Uenishi G, Park MAe, Liu P, Suknuntha K, Raymond M, Choi YJung, Thomson JA, Ong IM, Slukvin II. SOX17 integrates HOXA and arterial programs in hemogenic endothelium to drive definitive lympho-myeloid hematopoiesis. Cell Rep. 2021;34(7):108758.

Magli A, Baik J, Mills LJ, Kwak I-Y, Dillon BS, Gonzalez RMondragon, Stafford DA, Swanson SA, Stewart R, Thomson JA, et al. Time-dependent Pax3-mediated chromatin remodeling and cooperation with Six4 and Tead2 specify the skeletal myogenic lineage in developing mesoderm. PLoS Biol. 2019;17(2):e3000153.