Biblio

Author Title [ Type(Asc)] Year
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Journal Article
Jia BBlair, Jussila A, Kern C, Zhu Q, Ren B. A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH. Nat Biotechnol. 2023.
Lee L, Yu H, Jia BBlair, Jussila A, Zhu C, Chen J, Xie L, Hafner A, Mishra S, Wang DDennis, et al. SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data. Nat Commun. 2023;14(1):4873.
Chung C-Y, Ma Z, Dravis C, Preissl S, Poirion O, Luna G, Hou X, Giraddi RR, Ren B, Wahl GM. Single-Cell Chromatin Analysis of Mammary Gland Development Reveals Cell-State Transcriptional Regulators and Lineage Relationships. Cell Rep. 2019;29(2):495-510.e6.
Leung D, Du T, Wagner U, Xie W, Lee AYoung, Goyal P, Li Y, Szulwach KE, Jin P, Lorincz MC, et al. Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1. Proc Natl Acad Sci U S A. 2014.
Wang Y, Shi H-D, Zhang H-L, Chen Y-Yu, Ren B, Tang Q, Sun Q, Zhang Q-L, Liu J-G. A Multifunctional Nanozyme with NADH Dehydrogenase-like Activity and Nitric Oxide Release Under Near Infrared Light Irradiation as an Efficient Therapeutic for Antimicrobial Resistance Infection and Wound Healing. Adv Healthc Mater. 2023:e2300568.
Whitehead AJ, Hocker JD, Ren B, Engler AJ. Improved epicardial cardiac fibroblast generation from iPSCs. J Mol Cell Cardiol. 2021.
Kubo N, Chen PB, Hu R, Ye Z, Sasaki H, Ren B. H3K4me1 facilitates promoter-enhancer interactions and gene activation during embryonic stem cell differentiation. Mol Cell. 2024.
Zhou P, VanDusen NJ, Zhang Y, Cao Y, Sethi I, Hu R, Zhang S, Wang G, Ye L, Mazumdar N, et al. Dynamic changes in P300 enhancers and enhancer-promoter contacts control mouse cardiomyocyte maturation. Dev Cell. 2023.
Li Y, Rivera CM, Ishii H, Jin F, Selvaraj S, Lee AYoung, Dixon JR, Ren B. CRISPR Reveals a Distal Super-Enhancer Required for Sox2 Expression in Mouse Embryonic Stem Cells. PLoS One. 2014;9(12):e114485.
Lister R, Pelizzola M, Kida YS, R Hawkins D, Nery JR, Hon G, Antosiewicz-Bourget J, O'Malley R, Castanon R, Klugman S, et al. Corrigendum: Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature. 2014;514(7520):126.
Whitehead AJ, Atcha H, Hocker JD, Ren B, Engler AJ. AP-1 signaling modulates cardiac fibroblast stress responses. J Cell Sci. 2023.
Wu J, Okamura D, Li M, Suzuki K, Luo C, Ma L, He Y, Li Z, Benner C, Tamura I, et al. An alternative pluripotent state confers interspecies chimaeric competency. Nature. 2015.