Biblio

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Journal Article

Wang Z, Fu Y, Seno A, Bi Z, Pawar AS, Ji H, Almutairy BSaeed, Qiu Y, Zhang W, Thakur C, et al. Tumor suppressive activity of AHR in environmental arsenic-induced carcinogenesis. Toxicol Appl Pharmacol. 2023:116747.

Mages S, Moriel N, Avraham-Davidi I, Murray E, Watter J, Chen F, Rozenblatt-Rosen O, Klughammer J, Regev, iv A, Nitzan M. TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics. Nat Biotechnol. 2023.

Chen F, Yao H, Wang M, Yu B, Liu Q, Li J, He Z, Hu Y-P. Suppressing Pitx2 inhibits proliferation and promotes differentiation of iHepSCs. Int J Biochem Cell Biol. 2016;80:154-162.

Liu S, J Iorgulescu B, Li S, Borji M, Barrera-Lopez IA, Shanmugam V, Lyu H, Morriss JW, Garcia ZN, Murray E, et al. Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response. Immunity. 2022;55(10):1940-1952.e5.

Russell AJC, Weir JA, Nadaf NM, Shabet M, Kumar V, Kambhampati S, Raichur R, Marrero GJ, Liu S, Balderrama KS, et al. Slide-tags enables single-nucleus barcoding for multimodal spatial genomics. Nature. 2023.

Wang M-J, Chen F, Li J-X, Liu C-C, Bin Zhang H-, Xia Y, Yu B, You P, Xiang D, Lu L, et al. Reversal of hepatocyte senescence after continuous in vivo cell proliferation. Hepatology. 2014.

Uzquiano A, Kedaigle AJ, Pigoni M, Paulsen B, Adiconis X, Kim K, Faits T, Nagaraja S, Antón-Bolaños N, Gerhardinger C, et al. Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex. Cell. 2022;185(20):3770-3788.e27.

Wu C, Chen F, Huang S, Zhang Z, Wan J, Zhang W, Liu X. Progress on the role of traditional Chinese medicine in therapeutic angiogenesis of heart failure. J Ethnopharmacol. 2022:115770.

Liu Y, Lin J, Zhang M, Chen K, Yang S, Wang Q, Yang H, Xie S, Zhou Y, Zhang X, et al. PINK1 is required for timely cell-type specific mitochondrial clearance during Drosophila midgut metamorphosis. Dev Biol. 2016.

Yi S, Li M, Yang Q, Zhang X, Chen F, Qin Z, Yi S, Huang L, Wei H, Zhang Q, et al. Novel SLC12A1 Mutations cause Bartter Syndrome in Two Patients with Different Prognoses. Clin Chim Acta. 2022.

Zhang Q, Thakur C, Shi J, Sun J, Fu Y, Stemmer P, Chen F. New discoveries of mdig in the epigenetic regulation of cancers. Semin Cancer Biol. 2019.

Wang Y, Fan JLinyue, Melms JC, Amin ADipak, Georgis Y, Barrera I, Ho P, Tagore S, Abril-Rodríguez G, He S, et al. Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens. Nat Genet. 2023.

Langlieb J, Sachdev NS, Balderrama KS, Nadaf NM, Raj M, Murray E, Webber JT, Vanderburg C, Gazestani V, Tward D, et al. The molecular cytoarchitecture of the adult mouse brain. Nature. 2023;624(7991):333-342.

Li L, Bi Z, Wadgaonkar P, Lu Y, Zhang Q, Fu Y, Thakur C, Wang L, Chen F. Metabolic and epigenetic reprogramming in the arsenic-induced cancer stem cells. Semin Cancer Biol. 2019.

Chen F, Chen Z, Wu H-T, Chen X-X, Zhan P, Wei Z-Y, Ouyang Z, Jiang X, Shen A, Luo M-H, et al. Mesenchymal Stem Cell-Derived Exosomes Attenuate Murine Cytomegalovirus-Infected Pneumonia via NF-κB/NLRP3 Signaling Pathway. Viruses. 2024;16(4).

Chen F. Linking metabolism to epigenetics in stem cells and cancer stem cells. Semin Cancer Biol. 2019.

Shang S, Yang C, Chen F, Xiang R-S, Zhang H, Dai S-Y, Liu J, Lv X-X, Zhang C, Liu X-T, et al. ID1 expressing macrophages support cancer cell stemness and limit CD8 T cell infiltration in colorectal cancer. Nat Commun. 2023;14(1):7661.

Liu F, Liang C, Li Z, Zhao S, Yuan H, Yao R, Qin Z, Shangguan S, Zhang S, Zou L-P, et al. Haplotype-specific MAPK3 expression in 16p11.2 deletion contributes to variable neurodevelopment. Brain. 2023.

Ji H, Bi Z, Pawar AS, Seno A, Almutairy BSaeed, Fu Y, Qiu Y, Zhang W, Wang Z, Thakur C, et al. Genomic and epigenetic characterization of the arsenic-induced oncogenic microRNA-21. Environ Pollut. 2024:123396.

Yi S, Tang X, Chen F, Wang L, Chen J, Yang Z, Huang M, Yi S, Huang L, Yang Q, et al. A genetic variant in the MAST1 gene is associated with mega-corpus-callosum syndrome with hypoplastic cerebellar vermis, in a fetus. Mol Genet Genomic Med. 2024;12(1):e2358.

Bao J, Wu Q, Wang Y, Li Y, Li L, Chen F, Wu X, Xie M, Bu H. Enhanced hepatic differentiation of rat bone marrow-derived mesenchymal stem cells in spheroidal aggregate culture on a decellularized liver scaffold. Int J Mol Med. 2016.

Chen D, Chen F, Lu J, Wang L, Yao F, Xu H. Doxorubicin-loaded PEG-CdTe QDs conjugated with anti-CXCR4 mAbs: a novel delivery system for extramedullary multiple myeloma treatment. J Mater Sci Mater Med. 2024;35(1):6.

Biermann J, Melms JC, Amin ADipak, Wang Y, Caprio LA, Karz A, Tagore S, Barrera I, Ibarra-Arellano MA, Andreatta M, et al. Dissecting the treatment-naive ecosystem of human melanoma brain metastasis. Cell. 2022;185(14):2591-2608.e30.

Hirz T, Mei S, Sarkar H, Kfoury Y, Wu S, Verhoeven BM, Subtelny AO, Zlatev DV, Wszolek MW, Salari K, et al. Dissecting the immune suppressive human prostate tumor microenvironment via integrated single-cell and spatial transcriptomic analyses. Nat Commun. 2023;14(1):663.

Chen H, Murray E, Sinha A, Laumas A, Li J, Lesman D, Nie X, Hotaling J, Guo J, Cairns BR, et al. Dissecting mammalian spermatogenesis using spatial transcriptomics. Cell Rep. 2021;37(5):109915.

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