Journal Article
Liu B, Liu J, Yu J, Wang Z, Sun Y, Li S, Lin Y-CJimmy, Chiang VL, Li W, Wang JP. Transcriptional Reprogramming of Xylem Cell Wall Biosynthesis in Tension Wood. Plant Physiol. 2021.
O'Geen H, Beitnere U, Garcia MS, Adhikari A, Cameron DL, Fenton TA, Copping NA, Deng P, Lock S, Halmai J, et al. Transcriptional reprogramming restores UBE3A brain-wide and rescues behavioral phenotypes in an Angelman Syndrome mouse model. Mol Ther. 2023.
Bunker BD, Nellimoottil TT, Boileau RM, Classen AK, Bilder D. The transcriptional response to tumorigenic polarity loss in Drosophila. Elife. 2015;4.
O'Meara C, Wamstad JA, Gladstone R, Fomovsky G, Butty V, Shrikumar A, Gannon J, Boyer L, Lee RT. Transcriptional Reversion of Cardiac Myocyte Fate During Mammalian Cardiac Regeneration. Circ Res. 2014.
Fu X, Djekidel MNadhir, Zhang Y. A transcriptional roadmap for 2C-like-to-pluripotent state transition. Sci Adv. 2020;6(22).
Reed X, Cobb MM, Skinbinski G, Roosen D, Kaganovich A, Ding J, Finkbeiner S, Cookson MR. Transcriptional signatures in iPSC-derived neurons are reproducible across labs when differentiation protocols are closely matched. Stem Cell Res. 2021;56:102558.
Ludwig LS, Lareau CA, Bao EL, Nandakumar SK, Muus C, Ulirsch JC, Chowdhary K, Buenrostro JD, Mohandas N, An X, et al. Transcriptional States and Chromatin Accessibility Underlying Human Erythropoiesis. Cell Rep. 2019;27(11):3228-3240.e7.
Collins AL, Kim Y, Bloom RJ, Kelada SN, Sethupathy P, Sullivan PF. Transcriptional targets of the schizophrenia risk gene MIR137. Transl Psychiatry. 2014;4:e404.
Gupta S, Dovey OM, Domingues AFilipa, Cyran OW, Cash CM, Giotopoulos G, Rak J, Cooper J, Gozdecka M, Dijkhuis L, et al. Transcriptional variability accelerates preleukemia by cell diversification and perturbation of protein synthesis. Sci Adv. 2022;8(31):eabn4886.
Nellore A, Zumaquero E, Scharer CD, Fucile CF, Tipton CM, R King G, Mi T, Mousseau B, Bradley JE, Zhou F, et al. A transcriptionally distinct subset of influenza-specific effector memory B cells predicts long-lived antibody responses to vaccination in humans. Immunity. 2023.
Schwer B, Wei P-C, Chang AN, Kao J, Du Z, Meyers RM, Alt FW. Transcription-associated processes cause DNA double-strand breaks and translocations in neural stem/progenitor cells. Proc Natl Acad Sci U S A. 2016.
Yang Y, Xu W, Gao F, Wen C, Zhao S, Yu Y, Jiao W, Mi X, Qin Y, Chen Z-J, et al. Transcription-replication conflicts in primordial germ cells necessitate the Fanconi anemia pathway to safeguard genome stability. Proc Natl Acad Sci U S A. 2022;119(34):e2203208119.
Zhu X-X, Li Q-Y, Shen C-C, Duan Z-B, Yu D-Y, Niu J-S, Ni Y-J, Jiang Y-M. Transcriptome Analysis for Abnormal Spike Development of the Wheat Mutant dms. PLoS One. 2016;11(3):e0149287.
Gazit R, Garrison BS, Rao TNageswara, Shay T, Costello J, Ericson J, Kim F, Collins JJ, Regev, iv A, Wagers AJ, et al. Transcriptome Analysis Identifies Regulators of Hematopoietic Stem and Progenitor Cells. Stem Cell Reports. 2013;1(3):266-280.
Guo ZHou, Jia YYan Sheng, Zeng YMing, Li ZFa, Lin JSheng. Transcriptome analysis identifies the differentially expressed genes related to the stemness of limbal stem cells in mice. Gene. 2021:145447.
Kanojia D, Kirtonia A, Srujana NSai Valli, Jeevanandan SPriyanka, Shyamsunder P, Sampath SSanjitha, Dakle P, Mayakonda A, Kaur H, Yanyi J, et al. Transcriptome analysis identifies TODL as a novel lncRNA associated with proliferation, differentiation, and tumorigenesis in liposarcoma through FOXM1 Running Title: TODL lncRNA as a potential therapeutic target for liposarcoma. Pharmacol Res. 2022:106462.
Gan L, Schwengberg S, Denecke B. Transcriptome analysis in cardiomyocyte-specific differentiation of murine embryonic stem cells reveals transcriptional regulation network. Gene Expr Patterns. 2014.
Gao W-J, Li H-X, Feng J, Lu X-R, Yin P-L, Jia H, Ma W-Z. Transcriptome Analysis in High Temperature Inhibiting Spermatogonial Stem Cell Differentiation In Vitro. Reprod Sci. 2022.
Jean C, Oliveira NMM, Intarapat S, Fuet A, Mazoyer C, De Almeida I, Trevers K, Boast S, Aubel P, Bertocchini F, et al. Transcriptome analysis of chicken ES, blastodermal and germ cells reveals that chick ES cells are equivalent to mouse ES cells rather than EpiSC. Stem Cell Res. 2014;14(1):54-67.
Cantelli BAline, Segura GGonzalez, Bitencourt TAparecida, de Abreu MHeinzen, Petrucelli MFazolin, Peronni K, Sanches PRodrigo, Beleboni ROliveira, Júnior WAraújo da, Martinez-Rossi NMaria, et al. Transcriptome Analysis of Co-Cultures of THP-1 Human Macrophages with Inactivated Germinated Conidia. J Fungi (Basel). 2023;9(5).
Das D, Peng X, Lam A-TN, Bader JS, Avramopoulos D. Transcriptome analysis of human induced excitatory neurons supports a strong effect of clozapine on cholesterol biosynthesis. Schizophr Res. 2021;228:324-326.
Wang S, Li X, Zhao RChunhua. Transcriptome Analysis of Long Noncoding RNAs in Toll-Like Receptor 3-Activated Mesenchymal Stem Cells. Stem Cells Int. 2016;2016:6205485.
Kim J, Yang J, Yang R, Sicher RC, Chang C, Tucker ML. Transcriptome Analysis of Soybean Leaf Abscission Identifies Transcriptional Regulators of Organ Polarity and Cell Fate. Front Plant Sci. 2016;7:125.
Zhao ZQuan, Wang LJuan, Sun XWei, Zhang JJiao, Zhao YJu, Na RSu, Zhang JHua. Transcriptome Analysis of the Capra hircus Ovary. PLoS One. 2015;10(3):e0121586.
Chittem K, Yajima WR, Goswami RS, Mendoza LEDel Río. Transcriptome analysis of the plant pathogen Sclerotinia sclerotiorum interaction with resistant and susceptible canola (Brassica napus) lines. PLoS One. 2020;15(3):e0229844.